[AMBER] Conversion of NAMD to Amber

From: Ramachandran, Balajee via AMBER <amber.ambermd.org>
Date: Fri, 14 Jul 2023 14:01:51 +0000

Dear Friends

Could you please help me how to convert the NAMD files to Amber. I want to compute the dG values using the Ambertools

FYI, I have applied this command but it is not working for me. Please suggest with the correct commands.

chamber -top <rtf> -param <prm> -psf <psf>

Earlier I tried with applying the -cmap, but it throws the error (given below)

Action chamber failed
      UnhandledArgumentWarning: -cmap

Thank you, Expecting the reply at the earliest

regards

Balajee
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Received on Fri Jul 14 2023 - 07:30:02 PDT
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