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-- ************************************************************************** -- Starting configuration of Amber version 22.0.0... -- CMake Version: 3.25.2 -- For how to use this build system, please read this wiki: -- http://ambermd.org/pmwiki/pmwiki.php/Main/CMake -- For a list of important CMake variables, check here: -- http://ambermd.org/pmwiki/pmwiki.php/Main/CMake-Common-Options -- ************************************************************************** -- Setting C compiler to gcc -- Setting CXX compiler to g++ -- Setting Fortran compiler to gfortran -- Amber source found, building AmberTools and Amber -- The C compiler identification is GNU 9.4.0 -- The CXX compiler identification is GNU 9.4.0 -- The Fortran compiler identification is GNU 9.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/gfortran - skipped -- Testing if stdlib.h can be included... -- Testing if stdlib.h can be included... yes -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found CUDA: /usr/local/cuda (found version "11.2") -- Downloading Python 3 Miniconda -- Detected Linux OS. Downloading the Linux installer -- Using 64 bit miniconda Downloading http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -> /home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh --2023-01-27 15:40:08-- http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh Resolving repo.continuum.io (repo.continuum.io)... 104.18.201.79, 104.18.200.79, 2606:4700::6812:c94f, ... Connecting to repo.continuum.io (repo.continuum.io)|104.18.201.79|:80... connected. HTTP request sent, awaiting response... 301 Moved Permanently Location: https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh [following] --2023-01-27 15:40:08-- https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh Resolving repo.anaconda.com (repo.anaconda.com)... 104.16.130.3, 104.16.131.3, 2606:4700::6810:8303, ... Connecting to repo.anaconda.com (repo.anaconda.com)|104.16.130.3|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 72402405 (69M) [application/x-sh] Saving to: ‘/home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh’ 0K .......... ....50K .......... .......... .......... .......... .......... 0% 3,60M 18s 100K .......... .......... .......... .......... .......... 0% 12,9M 14s 150K .......... .......... .......... .......... .......... 0% 9,43M 12s 200K .......... .......... .......... .......... .......... 0% 5,43M 12s 250K .......... .......... .......... .......... .......... 0% 14,6M 11s 300K .......... .......... .......... .......... .......... 0% 12,9M 10s 350K .......... .......... .......... .......... .......... 0% 9,02M 10s 400K .......... .......... .......... .......... .......... 0% 8,89M 10s ... 70300K .......... .......... .......... .......... .......... 99% 15,7M 0s 70350K .......... .......... .......... .......... .......... 99% 15,7M 0s 70400K .......... .......... .......... .......... .......... 99% 25,9M 0s 70450K .......... .......... .......... .......... .......... 99% 19,6M 0s 70500K .......... .......... .......... .......... .......... 99% 17,3M 0s 70550K .......... .......... .......... .......... .......... 99% 19,7M 0s 70600K .......... .......... .......... .......... .......... 99% 22,0M 0s 70650K .......... .......... .......... .......... .......... 99% 15,4M 0s 70700K ..... 100% 32,8M=4,3s 2023-01-27 15:40:12 (16,2 MB/s) - ‘/home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh’ saved [72402405/72402405] Installing Miniconda Python. PREFIX=/home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/install Unpacking payload ... Extracting : cryptography-38.0.1-py310h9ce1e76_0.conda: 0%| | 0/43 [0Extracting : cryptography-38.0.1-py310h9ce1e76_0.conda: 2%|▏ | 1/43 [0Extracting : pycosat-0.6.4-py310h5eee18b_0.conda: 2%|▏ | 1/43 [00:00<0Extracting : ruamel.yaml.clib-0.2.6-py310h5eee18b_1.conda: 5%|▍ | 2/43Extracting : pysocks-1.7.1-py310h06a4308_0.conda: 7%|▋ | 3/43 [00:00<0Extracting : tqdm-4.64.1-py310h06a4308_0.conda: 9%|▉ | 4/43 [00:00<00:Extracting : tqdm-4.64.1-py310h06a4308_0.conda: 12%|█▏ | 5/43 [00:00<00:Extracting : sqlite-3.40.0-h5082296_0.conda: 12%|█▏ | 5/43 [00:00<00:02,Extracting : urllib3-1.26.13-py310h06a4308_0.conda: 14%|█▍ | 6/43 [00:00Extracting : libgcc-ng-11.2.0-h1234567_1.conda: 16%|█▋ | 7/43 [00:00<00:Extracting : openssl-1.1.1s-h7f8727e_0.conda: 19%|█▊ | 8/43 [00:00<00:02Extracting : idna-3.4-py310h06a4308_0.conda: 21%|██ | 9/43 [00:00<00:02,Extracting : python-3.10.8-h7a1cb2a_1.conda: 23%|██▎ | 10/43 [00:00<00:02Extracting : python-3.10.8-h7a1cb2a_1.conda: 26%|██▌ | 11/43 [00:00<00:01Extracting : libuuid-1.41.5-h5eee18b_0.conda: 26%|██▌ | 11/43 [00:00<00:0Extracting : ncurses-6.3-h5eee18b_3.conda: 28%|██▊ | 12/43 [00:00<00:01, Extracting : conda-22.11.1-py310h06a4308_4.conda: 30%|███ | 13/43 [00:00<Extracting : charset-normalizer-2.0.4-pyhd3eb1b0_0.conda: 33%|███▎ | 14/43Extracting : toolz-0.12.0-py310h06a4308_0.conda: 35%|███▍ | 15/43 [00:00<0Extracting : ruamel.yaml-0.17.21-py310h5eee18b_0.conda: 37%|███▋ | 16/43 [Extracting : libffi-3.4.2-h6a678d5_6.conda: 40%|███▉ | 17/43 [00:00<00:00,Extracting : ca-certificates-2022.10.11-h06a4308_0.conda: 42%|████▏ | 18/43Extracting : pyopenssl-22.0.0-pyhd3eb1b0_0.conda: 44%|████▍ | 19/43 [00:00<Extracting : conda-package-handling-1.9.0-py310h5eee18b_1.conda: 47%|████▋ Extracting : tzdata-2022g-h04d1e81_0.conda: 49%|████▉ | 21/43 [00:00<00:00,Extracting : tk-8.6.12-h1ccaba5_0.conda: 51%|█████ | 22/43 [00:00<00:00, 26Extracting : ld_impl_linux-64-2.38-h1181459_1.conda: 53%|█████▎ | 23/43 [00:Extracting : libstdcxx-ng-11.2.0-h1234567_1.conda: 56%|█████▌ | 24/43 [00:00Extracting : certifi-2022.12.7-py310h06a4308_0.conda: 58%|█████▊ | 25/43 [00Extracting : _openmp_mutex-5.1-1_gnu.conda: 60%|██████ | 26/43 [00:00<00:00,Extracting : conda-content-trust-0.1.3-py310h06a4308_0.conda: 63%|██████▎ | 2Extracting : bzip2-1.0.8-h7b6447c_0.conda: 65%|██████▌ | 28/43 [00:00<00:00, Extracting : pluggy-1.0.0-py310h06a4308_1.conda: 67%|██████▋ | 29/43 [00:00<0Extracting : brotlipy-0.7.0-py310h7f8727e_1002.conda: 70%|██████▉ | 30/43 [00Extracting : libgomp-11.2.0-h1234567_1.conda: 72%|███████▏ | 31/43 [00:00<00:0Extracting : cffi-1.15.1-py310h5eee18b_3.conda: 74%|███████▍ | 32/43 [00:00<00Extracting : xz-5.2.8-h5eee18b_0.conda: 77%|███████▋ | 33/43 [00:00<00:00, 26.Extracting : requests-2.28.1-py310h06a4308_0.conda: 79%|███████▉ | 34/43 [00:0Extracting : _libgcc_mutex-0.1-main.conda: 81%|████████▏ | 35/43 [00:00<00:00, Extracting : setuptools-65.5.0-py310h06a4308_0.conda: 84%|████████▎ | 36/43 [00Extracting : readline-8.2-h5eee18b_0.conda: 86%|████████▌ | 37/43 [00:00<00:00,Extracting : pycparser-2.21-pyhd3eb1b0_0.conda: 88%|████████▊ | 38/43 [00:00<00Extracting : zlib-1.2.13-h5eee18b_0.conda: 91%|█████████ | 39/43 [00:00<00:00, Extracting : pip-22.3.1-py310h06a4308_0.conda: 93%|█████████▎| 40/43 [00:00<00:Extracting : six-1.16.0-pyhd3eb1b0_1.conda: 95%|█████████▌| 41/43 [00:00<00:00,Extracting : wheel-0.37.1-pyhd3eb1b0_0.conda: 98%|█████████▊| 42/43 [00:00<00:0 Installing base environment... Downloading and Extracting Packages Downloading and Extracting Packages Preparing transaction: ...working... done Executing transaction: ...working... done Installing * environment... /home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh: 438: [[: not found /home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/download/Miniconda3-latest-Linux-x86_64.sh: 444: [[: not found CondaFileIOError: '/home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/install/pkgs/envs/*/env.txt'. [Errno 2] No such file or directory: '/home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/miniconda/install/pkgs/envs/*/env.txt' CMake Error at cmake/UseMiniconda.cmake:138 (message): Miniconda installer failed! Please fix what's wrong, or disable Miniconda. Call Stack (most recent call first): cmake/PythonInterpreterConfig.cmake:63 (download_and_use_miniconda) CMakeLists.txt:121 (include) -- Configuring incomplete, errors occurred! See also "/home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/CMakeOutput.log". See also "/home/tga_user/AmberInstallation/amber22_src/build/CMakeFiles/CMakeError.log". If the cmake build report looks OK, you should now do the following: make install source /home/tga_user/AmberInstallation/amber22/amber.sh Consider adding the last line to your login startup script, e.g. ~/.bashrc _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Fri Jan 27 2023 - 07:30:02 PST