Dear Amber users,
I’m trying to simulate a self-complementary oligonucleotide (5 -CTTATGGGCCCATAAG-3 ) by bsc1+TIP3P in 100nM NaCl, for 500ns. However, I didn’t observe any secondary structures in the trajectory. I’m wondering if there's anything wrong in my production run settings and how do I fix it. The md.in file is attached.
Thanks a lot!
Best regards,
Jiaan
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- application/octet-stream attachment: md.in
Received on Sun Oct 30 2022 - 08:00:02 PDT
