Re: [AMBER] Segmentation fault when starting parmchk2 for an artificial nucleotide

From: Jiaan Zhu via AMBER <amber.ambermd.org>
Date: Sun, 25 Sep 2022 21:31:44 +0100

Dear David,

I tried the same commands on a Mac OS machine and it worked! Thanks a lot!

Best regards,
Jiaan

> On Sep 25, 2022, at 2:55 AM, Jiaan Zhu <zhujiaan16.mails.ucas.ac.cn> wrote:
>
> Dear David,
>
> Thanks for your reply! I’m using AmberTools20 on a Red Hat Enterprise Linux (Version="8.5 (Ootpa)”) machine with gnu compiler(gcc version 8.5.0).
>
> Best regards,
> Jiaan
>
>> On Sep 24, 2022, at 2:30 PM, David A Case via AMBER <amber.ambermd.org> wrote:
>>
>> On Sun, Sep 04, 2022, Jiaan Zhu via AMBER wrote:
>>
>>> 4.parmchk2 -i 1wa.prepin -f prepi -o frcmod.1wa -a Y -p $AMBERHOME/dat/leap/parm/parm10.dat
>>>
>>> There’s an error in the step 4: $AMBERHOME/bin/parmchk2: line 4: 666869 Segmentation fault (core dumped) $AMBERHOME/bin/to_be_dispatched/parmchk2 "$@“
>>>
>>
>> I can't reproduce the problem. parmchk2 with your input above works fine
>> for me.
>>
>> Can you say what version of AmberTools you have, and what OS and compiler
>> you are using?
>>
>> ...apologies for the slow reply...good luck...dac
>>
>>
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>


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Received on Sun Sep 25 2022 - 14:00:04 PDT
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