Re: [AMBER] Segmentation fault when starting parmchk2 for an artificial nucleotide

From: Jiaan Zhu via AMBER <amber.ambermd.org>
Date: Sun, 25 Sep 2022 02:55:06 +0100

Dear David,

Thanks for your reply! I’m using AmberTools20 on a Red Hat Enterprise Linux (Version="8.5 (Ootpa)”) machine with gnu compiler(gcc version 8.5.0).

Best regards,
Jiaan

> On Sep 24, 2022, at 2:30 PM, David A Case via AMBER <amber.ambermd.org> wrote:
>
> On Sun, Sep 04, 2022, Jiaan Zhu via AMBER wrote:
>
>> 4.parmchk2 -i 1wa.prepin -f prepi -o frcmod.1wa -a Y -p $AMBERHOME/dat/leap/parm/parm10.dat
>>
>> There’s an error in the step 4: $AMBERHOME/bin/parmchk2: line 4: 666869 Segmentation fault (core dumped) $AMBERHOME/bin/to_be_dispatched/parmchk2 "$@“
>>
>
> I can't reproduce the problem. parmchk2 with your input above works fine
> for me.
>
> Can you say what version of AmberTools you have, and what OS and compiler
> you are using?
>
> ...apologies for the slow reply...good luck...dac
>
>
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Received on Sat Sep 24 2022 - 19:00:02 PDT
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