Re: [AMBER] xleap problem

From: Ibrahim Said <saidibrahim569.gmail.com>
Date: Thu, 10 Feb 2022 10:42:50 +0200

Hi dac
Thank you in advance. My file is 2KLR.pdb. It contains 10 dimers. I remove
9 of these dimers and save only single dimer using UCSF Chimera-1.15.

On Wed, Feb 9, 2022 at 11:17 PM David A Case <david.case.rutgers.edu> wrote:

> On Wed, Feb 09, 2022, Ibrahim Said wrote:
>
> >I'm using Amber 16. When using xleap to create *.prmtop and *.rst7 for a
> >protein in dimer form, xleap adds many extra dimers and forms cyclic
> >structure. Please, can someone help me.
>
> If looking at the TER cards doesn't help, we would need to know details,
> and
> probably the contents (and origin) of whatever PDB file you are using.
>
> ...thx...dac
>
>
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Received on Thu Feb 10 2022 - 01:00:02 PST
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