[AMBER] Problem with make test.parallel during installation of parallel version of Amber

From: Charlotta Lebedenko <clebedenko.fordham.edu>
Date: Wed, 9 Feb 2022 19:55:54 -0500

Hello,

I am attempting to install Amber20 and to compile the parallel (MPI) version.
I have added -DMPI=TRUE -DCUDA=TRUE and -DBUILD_QUICK=TRUE to run_cmake.
The test.serial works fine with no errors.

I also ran:
export CUDA_VISIBLE_DEVICES=0
make test.cuda.serial
 And this CUDA test proceeded fine with no errors.


However, when I try to run:
export DO_PARALLEL="mpirun -np 2”

make test.parallel

The test just stops prematurely after:

 "make[3]: Entering directory '/apps/ambertoolsinstall/amber20/AmberTools/test/nab’

Running test to do simple minimization (this tests the molecular mechanics interface)"


I have attached the output file of this test below. I am not sure why the test just stops as it does not give any error messages. Does anyone know what could be wrong?

Thank you,
Charlotta Lebedenko

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Received on Wed Feb 09 2022 - 17:00:02 PST
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