[AMBER] Atom type of NO does not shown up in PARMCHK.DAT

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From: Reza Esmaeeli <goldeagle.93.gmail.com>
Date: Tue, 28 Sep 2021 14:38:31 -0400

Dear Amber users,

I am trying to parametrize a nucleotide analog with a NO2 functional group on the base. After running antechamber and getting the mol2 file, I get the following error from parmchk2:

Atom type of NO does not shown up in PARMCHK.DAT

That atom type is corresponding to the Nitrogen of the NO2 group.

Please advise

Reza
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Received on Tue Sep 28 2021 - 12:00:02 PDT