[AMBER] How to cap the residue/ nucleotide atoms

From: Rana Rehan Khalid <ray.binm.gmail.com>
Date: Fri, 13 Aug 2021 22:16:53 -0400

Dear amber Users

I have a nucleotide lets consider guanine and I want to cap the basepairing
(G-C) atoms of guanine. And want to study the affect of other 2 atoms on
the protein surface. How can I do this. I actually want, not to allow
basepairing atoms to interact with surface residue.


Please guide.

Best
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Received on Fri Aug 13 2021 - 19:30:02 PDT