[AMBER] Installation problem

From: Lida Cheng <lcheng.ucsb.edu>
Date: Tue, 10 Aug 2021 09:08:59 -0700

Hi,

I am trying to install amber on a linux subsystem.

But I encountered this problem. Could you please help me solve it?




Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
WARNING:
    You currently have a PYTHONPATH environment variable set. This may cause
    unexpected behavior when running the Python interpreter in Miniconda3.
    For best results, please verify that your PYTHONPATH only points to
    directories of packages that are compatible with the Python interpreter
    in Miniconda3: /home/lc/amber20_src/build/CMakeFiles/miniconda/install
-- Updating and installing required and optional packages...
Collecting package metadata (current_repodata.json): ...working... failed

CondaHTTPError: HTTP 000 CONNECTION FAILED for url <
https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json>
Elapsed: -

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your
way.

If your current network has https://www.anaconda.com blocked, please file
a support request with your network engineering team.

'https://repo.anaconda.com/pkgs/main/linux-64'


Requirement already satisfied: pip in
./CMakeFiles/miniconda/install/lib/python3.9/site-packages (21.1.3)
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7f22f9829a90>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/pip/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7f22f9829a30>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/pip/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7f22f9829ac0>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/pip/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7f22f9829700>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/pip/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7f22f97be5b0>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/pip/
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7fe2fcd98ca0>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/setuptools/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7fe2fcd98eb0>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/setuptools/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7fe2fcd410a0>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/setuptools/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7fe2fcd41220>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/setuptools/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None,
status=None)) after connection broken by
'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object
at 0x7fe2fcd413d0>: Failed to establish a new connection: [Errno -2] Name
or service not known')': /simple/setuptools/
ERROR: Could not find a version that satisfies the requirement
setuptools==47.3.1 (from versions: none)
ERROR: No matching distribution found for setuptools==47.3.1
Collecting package metadata (current_repodata.json): ...working... failed

CondaHTTPError: HTTP 000 CONNECTION FAILED for url <
https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json>
Elapsed: -

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your
way.

If your current network has https://www.anaconda.com blocked, please file
a support request with your network engineering team.

'https://repo.anaconda.com/pkgs/main/linux-64'


Collecting package metadata (current_repodata.json): ...working... failed

CondaHTTPError: HTTP 000 CONNECTION FAILED for url <
https://conda.anaconda.org/conda-forge/linux-64/current_repodata.json>
Elapsed: -

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your
way.
'https://conda.anaconda.org/conda-forge/linux-64'


Collecting package metadata (current_repodata.json): ...working... failed

CondaHTTPError: HTTP 000 CONNECTION FAILED for url <
https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json>
Elapsed: -

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your
way.

If your current network has https://www.anaconda.com blocked, please file
a support request with your network engineering team.

'https://repo.anaconda.com/pkgs/main/linux-64'


Collecting package metadata (current_repodata.json): ...working... failed

CondaHTTPError: HTTP 000 CONNECTION FAILED for url <
https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json>
Elapsed: -

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your
way.

If your current network has https://www.anaconda.com blocked, please file
a support request with your network engineering team.

'https://repo.anaconda.com/pkgs/main/linux-64'


CMake Error at cmake/UseMiniconda.cmake:172 (message):
  Installation of packages failed! Please fix what's wrong, or disable
  Miniconda.
Call Stack (most recent call first):
  cmake/PythonInterpreterConfig.cmake:64 (download_and_use_miniconda)
  CMakeLists.txt:121 (include)

Thank you for your time

Best,

Lida
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Received on Tue Aug 10 2021 - 09:30:02 PDT
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