[AMBER] how does amber calculate the water bridge fraction

From: Ming Tang <m21.tang.qut.edu.au>
Date: Fri, 11 Jun 2021 09:47:02 +0000

Dear support,

I am confused about how amber calculate water bridge between residues. Below to fractions are from one of my analysis. If I want to calculate the occupancy of the water bridge between 73:GLN and 100:DC, should I use 33%, (33+36)% or 36%?

Bridge Res 73:GLN 100:DC 101:DC 36% (fraction)
Bridge Res 73:GLN 100:DC 33% (fraction)

Thanks a lot,
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Received on Fri Jun 11 2021 - 03:00:02 PDT
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