Dear AMBER community.
I ran into a set of problems when installing AMBER20 on CentOS 7.
Below are the steps I followed and the error messages I ran into during “make install”.
My questions are:
1. Should I keep using cmake3 for CentOS 7? But apparently during “make install” step, still cmake is called.
2. Should I re-build AMBER20 with cmake?
How should I proceed….? Please let me know if more information are needed.
Thank you!
Guqin
=============================================================================================================
1. ## go to: https://ambermd.org/InstCentOS.php
## and install all packages needed for CentOS 7
2. ## according to: https://ambermd.org/pmwiki/index.php/Main/CMake-Quick-Start
## on CentOS 7, cmake3 should be used in all commands in place of cmake
yum install cmake3
3. ## go to amber20_src/build
## edit run_cmake file: all cmake has been changed to cmake3
./run_cmake
## the build report looks complicated but seemingly no errors.
4. ## under amber20_src/build
make install
## 4a. at around 29%, error said "cmake is not found"
apparently I don't have a way to change cmake to cmake3 in this step...so I installed cmake with yum.
yum install cmake
make install
## 4b. at 32% got below error messages:
## Scanning dependencies of target cifparse
## [ 32%] Building C object AmberTools/src/cifparse/CMakeFiles/cifparse.dir/cifparse.c.o
## [ 32%] Building C object AmberTools/src/cifparse/CMakeFiles/cifparse.dir/lex.cif.c.o
## [ 32%] Building C object AmberTools/src/cifparse/CMakeFiles/cifparse.dir/cifp.tab.c.o
## [ 32%] Linking C shared library libcifparse.so
## CMakeFiles/cifparse.dir/lex.cif.c.o:(.bss+0x8): multiple definition of `cifpin'
## CMakeFiles/cifparse.dir/cifparse.c.o:(.bss+0x0): first defined here
## collect2: error: ld returned 1 exit status
## make[2]: *** [AmberTools/src/cifparse/libcifparse.so] Error 1
## make[1]: *** [AmberTools/src/cifparse/CMakeFiles/cifparse.dir/all] Error 2
## make: *** [all] Error 2
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Received on Mon Apr 12 2021 - 21:00:02 PDT
