Re: [AMBER] Discrepancy in experimental and MMPBSA pattern of binding energy

From: Manisha <manishachauhan0403.gmail.com>
Date: Mon, 12 Apr 2021 11:20:16 +0530

I did run the simulations for quite long almost 500ns. But the main
question here is Why the stretch of DNA which shows binding in Anisotropy
assay is unable to show binding in MMPBSA and also the stretch which shows
absolutely no binding in anisotropy assay shows significant binding in
MMPBSA
?

Sincerely,

*Manisha*

*Ph.D. Scholar*

Multidisciplinary Centre For Advanced Research and Studies

Jamia Millia Islamia

Delhi-110025

Ph.no: 9518014737
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Received on Sun Apr 11 2021 - 23:00:02 PDT
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