Re: [AMBER] Great news!

From: Gordon Richard Chalmers <gordoncs.uga.edu>
Date: Thu, 1 Apr 2021 15:18:02 +0000

Maybe you should ask D.E. Shaw if it works...

________________________________
From: andrea.cavalli.irb.usi.ch <andrea.cavalli.irb.usi.ch>
Sent: Thursday, April 1, 2021 11:10 AM
To: AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] Great news!

[EXTERNAL SENDER - PROCEED CAUTIOUSLY]


Will it work also tomorrow?
----------------------------------------------------------------
Andrea Cavalli
Group Leader. Computational Structural Biology
Institute for Research in Biomedicine
Università della Svizzera Italiana
Via Vincenzo Vela 6
CH-6500 Bellinzona

Phone : +41 91 820 0391
Fax: : +41 91 820 0305



> On 1 Apr 2021, at 17:05, Ross Walker <ross.rosswalker.co.uk> wrote:
>
> Nice work!
>
> "About one year ago..." - Hmmm, did you couple this Cold Optimized Virtual Industrial Design simulator to a DNA expression system to verify it experimentally by any chance?
>
>> On Apr 1, 2021, at 10:51, Adrian Roitberg <roitberg.ufl.edu> wrote:
>>
>> Hi Everyone
>>
>> The Amber developers' team is happy to announce a breakthrough that will
>> change the way we do simulations.
>>
>> About one year ago, we started building an Amber-specific quantum
>> computer (QAMBER) in the basement of Jason Swails' home, making use of
>> the low temperatures in Pennsylvania. Last weekend we finally had a
>> working port of Amber.
>>
>> Our first test was to create the full sequence of a ribosome a big water
>> box. We saw the ribosome fold and assemble itself in a matter of seconds !
>>
>> We then got greedy, and added some mRNA and some loose aminoacids. We
>> saw spontaneous translation of that mRNA into a protein, which proceeded
>> to fold itself into the correct structure.
>>
>> We are still discussing exactly what water/ions model is best, but we
>> feel this is a breakthrough worth celebrating as a community.
>>
>> Donations towards Jason's electric bill for the superconducting magnets
>> are welcome.
>>
>>
>> Adrian
>>
>>
>> --
>> Dr. Adrian E. Roitberg
>> V.T. and Louise Jackson Professor in Chemistry
>> Department of Chemistry
>> University of Florida
>> roitberg.ufl.edu
>> 352-392-6972
>>
>>
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>
>
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Received on Thu Apr 01 2021 - 08:30:03 PDT
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