[AMBER] Convert SIRAH coarse-grained model back to all-atomic pdb file format?

From: Michael Shokhen <michael.shokhen.biu.ac.il>
Date: Wed, 31 Mar 2021 06:39:57 +0000

Dear AMBER experts,

The coarse-grained SIRAH force field is implemented in AMBER20.
There are several tutorials also. Thanks to them I have converted
PDB all-atomic structure of my protein to the SIRAH coarse-grained
file format and successfully conducted molecular dynamics simulation.
The problem is how to convert the final SIRAH coarse-grained
file format of my protein back to all-atomic PDB file format.
Unfortunately, this information is missed in AMBER SIRAH tutorials.
Your help appreciated.


Michael Shokhen, PhD
Associate Professor
Department of Chemistry
Bar Ilan University,
Ramat Gan, 52900
email: shokhen.mail.biu.ac.il<https://webmail.biu.ac.il/owa/redir.aspx?C=a160ef9b9a6b4d06992402715d3ee465&URL=mailto%3ashokhen%40mail.biu.ac.il>
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Received on Wed Mar 31 2021 - 00:00:02 PDT
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