Actually, I have a question also about VMD.
Is it possible to docking the drug into the DNA interface with VMD? or how?
My aim to use (and prepare) it for QM/MM.
If someone give me some advice, I will be grateful
Thank u in advance
Işılay Öztürk
isilayozturk.gmail.com
Jatin Kashyap <jk435.njit.edu>, 16 Mar 2021 Sal, 06:23 tarihinde şunu yazdı:
> Dear AMBER Community,
>
> I am trying to visualize a .nc file in VMD by following a tutorial[1]. The
> tutorial visualization works fine but when I try the same steps with my own
> files [2], it throws following error:
>
> Problem reading CRD file
> Info) Finished with coordinate file .../short_traj.nc
>
> Can anybody please help to understand what is wrong with my approach.
>
> Thank you.
>
> [1]
> https://ambermd.org/tutorials/basic/tutorial2/section6.htm <
> https://ambermd.org/tutorials/basic/tutorial2/section6.htm>
>
>
> ——
> Jatin Kashyap
> Ph.D. Student
> Dr. Dibakar Datta Group
> Department of Mechanical and Industrial Engineering
> New Jersey Institute of Technology (NJIT)
> University Heights
> Newark, NJ 07102-1982
> Phone- (201)889-5783
> Email- jk435.njit.edu
>
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
*_______________________*
*PhD. Student Işılay Öztürk*
*EGE UNIVERSITY Graduate School of Natural and Applied ScienceDepartmant of
Chemistry / Physical Chemistry35100 Bornova / IZMIR / TURKEY*
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Received on Tue Mar 16 2021 - 03:00:02 PDT
