Thanks David, indeed it is working :)
On Mon, Dec 28, 2020 at 9:07 AM David A Case <david.case.rutgers.edu> wrote:
> On Sun, Dec 27, 2020, Sebastian S wrote:
> >
> >I'm new to nab and have been trying to build a circular DNA molecule.
> >To do this, I was following the nab tutorial, page 122
>
> Wow: this is documentation from back in 2006....I'm guessing things have
> changed some since then.
>
> The current versions of the example programs are in
> $AMBERHOME/AmberTools/examples/nab. Try this, in that directory:
>
> nab program_9.nab getbase.nab
> ./program_9 140 0
>
> For me this creates a good-looking circle with 140 basepairs and a linking
> number of 0. (No changes were made to wc_helix or other codes.)
>
> ...good luck....dac
>
> .p.s: If you need more up-to-date written documentation, grab the
> Amber16 manual from here: ambermd.org/Manuals.php.
>
>
>
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Received on Mon Dec 28 2020 - 08:00:02 PST
