On Sun, Dec 27, 2020, Sebastian S wrote:
>
>I'm new to nab and have been trying to build a circular DNA molecule.
>To do this, I was following the nab tutorial, page 122
Wow: this is documentation from back in 2006....I'm guessing things have
changed some since then.
The current versions of the example programs are in
$AMBERHOME/AmberTools/examples/nab. Try this, in that directory:
nab program_9.nab getbase.nab
./program_9 140 0
For me this creates a good-looking circle with 140 basepairs and a linking
number of 0. (No changes were made to wc_helix or other codes.)
...good luck....dac
.p.s: If you need more up-to-date written documentation, grab the
Amber16 manual from here: ambermd.org/Manuals.php.
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Received on Mon Dec 28 2020 - 06:30:03 PST
