[AMBER] Cpptraj (post-processing rotation)

From: Женя Елизарова <zheneliz147.gmail.com>
Date: Mon, 21 Dec 2020 13:08:01 +0300

  Dear Amber developers,

I was trying to remove the rotation of a protein during cpptraj
post-processing. I used:
rms :1-327
but when I looked at the trajectory it seemed like water molecules
layered on each other. This didn't appear without rms, so I suppose it is
related to the visualization. Is it possible to post-process files without
rotation and normal behavior of water molecules?

Best regards,
Evgenia Elizarova
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Received on Mon Dec 21 2020 - 02:30:02 PST
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