Thank you Carlos and David, printBonds did the trick fast and simple.
I came to the realisation that I should have spent a little more time checking the available options in parmed though thank you very much for supplying a solution.
This will come in handy next time working on a multi molecular system.
Best regards
// Gustaf
> On 14 Dec 2020, at 15:11, David A Case <david.case.rutgers.edu> wrote:
>
> On Mon, Dec 14, 2020, Bill Ross wrote:
>
>> If you run MD in vacuum at 100K or more, it should become apparent if
>> the bond is there.
>
> Far easier: just use the parmed printBonds action to print out the bonds
> in the relevant region.
>
> ....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Dec 15 2020 - 00:00:03 PST
