Have you looked at the Glycam force field? If your residues are the same
and names match, the charges from that ff will be applied if it's loaded.
Bill
On 12/4/20 11:15 AM, Pinky Mazumder wrote:
> Dear AMBER users,
>
> I have built a model of carbohydrates using carbohydrate builder. The
> (.pdb) file I have got from there is without charge. So, my question is how
> to assign atomic charges on those atoms?
>
> Can AMBER do this? Or do I need to use any additional software?
>
>
> Any help could be appreciated.
>
>
> Thank you.
>
> Regards,
--
Phobrain.com
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Received on Fri Dec 04 2020 - 11:30:03 PST
