Hello
Thanks for your response!
I am attempting to install AmberTools20 and I have a couple of questions. When I try to install AmberTools20 using the "./run_cmake" I get the message "Cmake 3.8.1 or higher is required. You are running version 3.5.2". However, I have downloaded the "cmake-3.19.0-rc1-linux-x86_64.sh" and ran that for installation of CMake. I looked in the "run_make" script, but can't find where it list the directory for selecting my new CMake.
The other question is while I am building/installing AmberTools20, I have Amber18.tar.bz2 unpacked so that "only" AmberTools is built/installed. After that, I then untar Amber18.tar.bz2 and compile it? Do I just do the "./update_amber --update" and then "./configure gnu" to build/install Amber18 now?
Thanks much for your help,
Steve
-----Original Message-----
From: David A Case <david.case.rutgers.edu>
Sent: Tuesday, October 20, 2020 1:00 PM
To: AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] AMBER16 problem
On Tue, Oct 20, 2020, Seibold, Steve Allan wrote:
>I am trying to compile/install AMBER 16. When I run "./configure gnu",
>I get "Error: the X11 libraries are not in the usual location!....".
>So, did the "sudo apt-get install xorg-dev", but then I get the "Unmet
>dependencies. Try "apt-get -f install". I tried this, but it did not
>help...Suggestions?
It's certainly worth a try to download AmberTools20, and install that (using cmake, as per the instructions.) This has a more standard way of finding X11 stuff. I doubt anyone has tested this on a seven-year-old version of Ubuntu, but one can hope....
Note that you can (and should) use the current version of AmberTools
(AmberTools20) alongside pmemd from earler versions of Amber.
...hope this helps....dac
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Received on Wed Oct 21 2020 - 10:30:02 PDT
