Dear AMBER Users,
I have performed the SMD simulation where I pulled the two ends of the RNA
upto a certain length with a constant pulling speed and force constant (at
constant loading rates) and plotted the force-extension curves. But now I
want to pull the same two ends at constant force using
distance restraint. So, I am confused about the distang file for pulling
between two atoms at constant force. Which file/parameter I should use for
the constant force SMD simulations?
Also, How can I fix the force in SMD simulation?
Thanks in advance.
Best regards,
Vishal
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Received on Mon Oct 19 2020 - 05:30:02 PDT
