Re: [AMBER] VMD 1.9.4 could not read AMBER16 .mdcrd

From: <aishen.free.fr>
Date: Fri, 16 Oct 2020 15:16:44 +0200

https://www.omgubuntu.co.uk/how-to-install-wsl2-on-windows-10

I used this tutorial but I guess they are plenty on the web. I don't use
Xservor but i can be installed

Both work fine

https://itnext.io/using-windows-10-as-a-desktop-environment-for-linux-7b2d8239f2f1

Le 16/10/2020 à 14:46, Wu Xu a écrit :
> Dear Mariano,
>
> Yes, I am using VMD under windows. I do not know Windows Subsystem
> for Linux. I will see whether I can find the details.
>
> Thank you for your email.
>
> Best,
>
> Wu
>
> ________________________________
> From: Mariano Curti <mcurti.iciq.es>
> Sent: Friday, October 16, 2020 1:01 AM
> To: amber.ambermd.org <amber.ambermd.org>
> Subject: Re: [AMBER] VMD 1.9.4 could not read AMBER16 .mdcrd
>
> Dear Wu,
>
> Adding to this response, let me please mention that if you must use VMD
> under Windows, a way out is to install it through WSL (Windows Subsystem
> for Linux).
>
> Best regards,
>
> Mariano
>
>
> --
> Dr. Mariano Curti
> Postdoctoral researcher - Romero Group
> Institute of Chemical Research of Catalonia (ICIQ)
> Av. Països Catalans 16 – 43007 Tarragona (Spain)
> mcurti.iciq.es
>
>
> On 16/10/2020 7:31, Elvis Martis wrote:
>> Hi
>> If you are using VMD on windows, then it cannot load NetCDF trajectories at
>> the moment is what I have observed.
>> Best Regards
>> Elvis
>>
>>
>>
>> On Fri, 16 Oct 2020 at 09:55, Wu Xu <wu.xu.louisiana.edu> wrote:
>>
>>> Dear Amber users
>>>
>>> I used AMBER16 sander.MPI (-x filename.mdcrd) to create .mdcrd. However,
>>> VMD 1.9.4 could not read it. So no frames were added into .prmtop loaded
>>> first.
>>>
>>> I do not see the option "netCDF" format from VMD.
>>>
>>> Do you know how to solve this problem? Thanks,
>>>
>>> Wu
>>>
>>>
>>> Dr. Wu Xu
>>>
>>> Professor of Biochemistry
>>>
>>> Department of Chemistry
>>>
>>> Room No. 138, Montgomery Hall
>>>
>>> 300 E. St. Mary BLVD
>>>
>>> P.O. Box 43700
>>>
>>> University of Louisiana at Lafayette
>>>
>>> Lafayette, LA 70504
>>>
>>> Telephone: 337-482-5684 (office)
>>>
>>> 337-482-6739 (lab)
>>>
>>> Fax: 337-482-5676
>>>
>>> Email: wxx6941.louisiana.edu<mailto:wxx6941.louisiana.edu>
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
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Received on Fri Oct 16 2020 - 06:30:04 PDT
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