Hello amber team..I am getting following error and therefore not able to fully complie. Pls help!!
mv reduce /home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/bin/to_be_dispatched/cat ../reduce_template | sed "s/REPLACE_ME/reduce/" > /home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/bin/reducechmod +x /home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/bin/reduce/bin/rm -f /home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/dat/reduce_wwPDB_het_dict.txtcp /home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/AmberTools/src/reduce/reduce_wwPDB_het_dict.txt /home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/dat/reduce_wwPDB_het_dict.txtmake[3]: Leaving directory `/home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/AmberTools/src/reduce/reduce_src'make[2]: Leaving directory `/home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/AmberTools/src/reduce'(if [ "yes" = 'yes' -a "yes" = 'yes' ]; then \ cd moft && make install ;\fi ;\)make[2]: Entering directory `/home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/AmberTools/src/moft'[MoFT] CXX metatwist.cpp[MoFT] CXX /home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/bin/metatwistmetatwist.o: In function `boost::iostreams::detail::bzip2_decompressor_impl<std::allocator<char> >::~bzip2_decompressor_impl()':metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEED2Ev[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEED5Ev]+0x20): undefined reference to `boost::iostreams::detail::bzip2_base::~bzip2_base()'metatwist.o: In function `boost::iostreams::detail::bzip2_decompressor_impl<std::allocator<char> >::bzip2_decompressor_impl(bool)':metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEEC2Eb[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEEC5Eb]+0x32): undefined reference to `boost::iostreams::detail::bzip2_base::bzip2_base(boost::iostreams::bzip2_params const&)'metatwist.o: In function `boost::iostreams::detail::bzip2_decompressor_impl<std::allocator<char> >::filter(char const*&, char const*, char*&, char*, bool)':metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b]+0x8e): undefined reference to `boost::iostreams::detail::bzip2_base::before(char const*&, char const*, char*&, char*)'metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b]+0x9a): undefined reference to `boost::iostreams::detail::bzip2_base::decompress()'metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b]+0xa4): undefined reference to `boost::iostreams::bzip2::ok'metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b]+0xce): undefined reference to `boost::iostreams::detail::bzip2_base::check_end(char const*, char const*)'metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b]+0xe8): undefined reference to `boost::iostreams::detail::bzip2_base::after(char const*&, char*&)'metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b]+0xf2): undefined reference to `boost::iostreams::bzip2_error::check(int)'metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE6filterERPKcS6_RPcS8_b]+0xf9): undefined reference to `boost::iostreams::bzip2::stream_end'metatwist.o: In function `boost::iostreams::detail::bzip2_decompressor_impl<std::allocator<char> >::close()':metatwist.cpp:(.text._ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE5closeEv[_ZN5boost9iostreams6detail23bzip2_decompressor_implISaIcEE5closeEv]+0x1a): undefined reference to `boost::iostreams::detail::bzip2_base::end(bool)'metatwist.o: In function `void boost::iostreams::detail::bzip2_base::init<std::allocator<char> >(bool, boost::iostreams::detail::bzip2_allocator<std::allocator<char>, boost::iostreams::detail::bzip2_allocator_traits<std::allocator<char> >::type>&)':metatwist.cpp:(.text._ZN5boost9iostreams6detail10bzip2_base4initISaIcEEEvbRNS1_15bzip2_allocatorIT_NS1_22bzip2_allocator_traitsIS6_E4typeEEE[_ZN5boost9iostreams6detail10bzip2_base4initISaIcEEEvbRNS1_15bzip2_allocatorIT_NS1_22bzip2_allocator_traitsIS6_E4typeEEE]+0x67): undefined reference to `boost::iostreams::detail::bzip2_base::do_init(bool, void* (*)(void*, int, int), void (*)(void*, void*), void*)'collect2: error: ld returned 1 exit statusmake[2]: *** [/home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/bin/metatwist] Error 1make[2]: Leaving directory `/home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/AmberTools/src/moft'make[1]: *** [serial] Error 2make[1]: Leaving directory `/home/vibha_tandon/anwesh-jnu/softwares/AMBER20/amber20_src/AmberTools/src'make: *** [install] Error 2[root.localhost amber20_src]# Best regards!
Anwesh Pandey,SRF, SCMM,Jawaharlal Nehru University,New Delhi-67, India
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Received on Wed Oct 14 2020 - 07:00:02 PDT
