[AMBER] tinker_to_amber force fields

From: Kliuchnikov, Evgenii <Evgenii_Kliuchnikov.student.uml.edu>
Date: Wed, 22 Jul 2020 18:37:33 +0000

Dear Amber users,

I am trying to do MD simulation of RNA with Amoeba force filed, but I can't generate prmtop file for that. The process ends with the notification:

no success getting Atom Type Definition Parameters

when I use amoebabio09 or amoebabio18

And If I use amoebapro13 it gives:

no success finding Atoms in System!

My question is, what actual force fields are used in tinker_to_amber (I mean both, Amber and Amoeba)? And is it possible that tinker_to_amber just does not support RNA?

Thank you in advance,

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Received on Wed Jul 22 2020 - 12:00:03 PDT
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