Dear Amber users,
I am trying to do MD simulation of RNA with Amoeba force filed, but I can't generate prmtop file for that. The process ends with the notification:
no success getting Atom Type Definition Parameters
when I use amoebabio09 or amoebabio18
And If I use amoebapro13 it gives:
no success finding Atoms in System!
My question is, what actual force fields are used in tinker_to_amber (I mean both, Amber and Amoeba)? And is it possible that tinker_to_amber just does not support RNA?
Thank you in advance,
Evgenii
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 22 2020 - 12:00:03 PDT
