Hi everyone,
I'm hoping you could help me with something. I am running a membrane channel simulation, and I would like to make sure that ions (Na+, specifically) doesn't get into the selectivity filter of this channel, so I can see what happens when an ion is not present. I have done distance restraints before with one molecule, but I would like to exclude ALL Na+ ions from a particular area. Is there a way to do that in Amber? Would it be with adding multiple distance restraints? If so, how do I do multiple distance restraints?
Best wishes
Amanda
Dr. Amanda Buyan
Postdoctoral Fellow, Corry Lab
Research School of Biology
134 Linnaeus Way
Canberra, ACT 2601
amanda.buyan.anu.edu.au
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Received on Sun Jul 12 2020 - 18:30:04 PDT
