[AMBER] Question about SMD using polymer

From: Pinky Mazumder <pmazumder67.gmail.com>
Date: Mon, 6 Jul 2020 10:01:38 -0500

Hi all,


I want to observe the shear between the two polymer chains (*carbohydrates*).
Together, my both chains have 216 atoms. I placed them 8 Angstrom apart
from each other.


Now, if I want to pull one chain having another one fixed, what should I
do?
Do I Need to modify the Distance Restraint File of *ASMD Tutorial 26 *of
AMBER? Am I on the right track? If not please shed some light on my issue
or recommend me any other tutorial.


Thank you.

Sincerely,
Pinky
-- 
Pinky, Sharmi
AL,US
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Received on Mon Jul 06 2020 - 08:30:03 PDT
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