Re: [AMBER] Problem of Steered MD Simulation for unfolding of RNA

From: Souvik <sdey8.uic.edu>
Date: Thu, 2 Jul 2020 11:34:22 -0500

   You can refer to this tutorial to run SMD simulations in AMBER.


   [1]https://ambermd.org/tutorials/advanced/tutorial26/index.htm


   Sent from [2]Mail for Windows 10


   From: [3]Vishal Singh
   Sent: Thursday, July 2, 2020 6:47 AM
   To: [4]amber.ambermd.org
   Subject: [AMBER] Problem of Steered MD Simulation for unfolding of RNA


   Dear AMBER Users

   I want to perform Steered Molecular Dynamics (SMD) Simulation for the

   unfolding of RNA. But I did not find any suitable listed tutorial for this.

   How can I input the spring constant and the pulling velocity values in SMD

   simulation for the calculation of a force-extension curve for the unfolding

   of RNA ?

   Thanks.

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References

   1. https://ambermd.org/tutorials/advanced/tutorial26/index.htm
   2. https://go.microsoft.com/fwlink/?LinkId=550986
   3. mailto:vishal.chemistry5.gmail.com
   4. mailto:amber.ambermd.org
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Received on Thu Jul 02 2020 - 10:00:02 PDT