It would be easier to offer a solution if you could share the error
message.
The residue names for C- and N- terminal groups is “ACE” and “NME”
respectively. Also, look carefully at the atoms names.
On Wednesday, July 1, 2020, mohamed marzouk <mohamedmarzoukphysics.gmail.com>
wrote:
> Dear Amber users,
> I am trying to do caping for the system by Amber and get this warning
> message. Is this message mean there is a problem or just split the cap as
> part of the first residue
>
>
>
>
> Best regards,
> Mohamed Marzouk Sobeh
> Ph.D student at Life Science and Technology, Tokyo Institute of
> Technology, Tokyo, Japan.
> T.A Physics department,Ain Shams University, Cairo, Egypt.
> Emails:
> mohamed_marzouk.sci.asu.edu.eg
> marzouk.aa.m.titech.ac.jp
> marzouk_biophysics.yahoo.com
> mohamedmarzoukphysics.gmail.com
>
> Mob. and WhatsApp.:
> +81 070-4070-9549
> +2 01061417414
>
>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Best Regards
Elvis
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Jun 30 2020 - 22:00:04 PDT
