[AMBER] Tool to calculate CSP and NOE for DNA trajectory?

From: Kenneth Huang <kennethneltharion.gmail.com>
Date: Wed, 27 May 2020 19:47:41 -0400

Hi all,

A general question- does anyone know of tools (assuming there isn't a
combined suite) for calculating CSP or NOEs from a trajectory? I know
there's SPARTA+ and shiftX2 for protein CSPs for proteins, but with DNA all
I've seen is the NMR option in Gaussian, which seems prohibitively
expensive.

Likewise for NOEs I know of MD2NOE but haven't ever used it in context of
DNA, and other than back-calculating from the distance restraints, I was
just wondering if there had been any other options in cpptraj?

Best,

Kenneth
-- 
Ask yourselves, all of you, what power would hell have if those imprisoned
here could not dream of heaven?
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed May 27 2020 - 17:00:02 PDT
Custom Search