[AMBER] parameter for modified residue

From: sangita kachhap <sksan26.gmail.com>
Date: Mon, 18 May 2020 18:32:01 +0200

Dear All,

I am working on glycated oxy-hemoglobin.
I have generated parameters for oxy-heme and N-terminal glycated-Valine.
But when I am generating .prmtop and .inpcrd file, leap adding a "TER" card
between N-terminal glycated-Valine (first residue) and Histidine (second

Since TER is adding within the chain, will it be problematic for further MD


Best regards

Sangita Kachhap
Post Doctoral FellowJerzy Haber Institute of Catalysis and Surface Chemistry
Polish Academy of Sciences
Niezapominajek 8
PL-30239 Krakow, Poland

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Received on Mon May 18 2020 - 10:00:01 PDT
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