Re: [AMBER] Amber20 MPICH location problem

From: Filip Fratev <fratev.biomed.bas.bg>
Date: Sat, 16 May 2020 12:57:29 +0300

Sorry, indeed i meant MPICH...

На 16-May-20 в 06:54, Filip Fratev написа:
> Hi,
>
> I have a problem with MPIC location during Amber20 installation. I did
> everything according to the manual, created suggested paths and also
> many other things but without any success. I installed openmpi3 as it
> was also suggested but have the same problem. My system is Suse Tumbleweed.
>
> /--
> **************************************************************************//
> //-- Starting configuration of Amber version 20.0.0...//
> //-- CMake Version: 3.17.2//
> //-- For how to use this build system, please read this wiki://
> //--     http://ambermd.org/pmwiki/pmwiki.php/Main/CMake//
> //-- For a list of important CMake variables, check here://
> //-- http://ambermd.org/pmwiki/pmwiki.php/Main/CMake-Common-Options//
> //--
> **************************************************************************//
> //-- Amber source found, building AmberTools and Amber//
> //-- Could NOT find MPI_C (missing: MPI_mpi_LIBRARY MPI_C_HEADER_DIR
> MPI_C_WORKS) //
> //-- Could NOT find MPI_CXX (missing: MPI_mpicxx_LIBRARY MPI_mpi_LIBRARY
> MPI_CXX_HEADER_DIR MPI_CXX_WORKS) //
> //-- Could NOT find MPI_Fortran (missing: MPI_mpifort_LIBRARY
> MPI_mpi_LIBRARY MPI_Fortran_F77_HEADER_DIR MPI_Fortran_MODULE_DIR
> MPI_Fortran_WORKS) //
> //-- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND
> MPI_Fortran_FOUND) //
> //CMake Error at cmake/MPIConfig.cmake:12 (message)://
> //  You requested MPI, but the MPI C library was not found. Please
> install one//
> //  and try again, or set MPI_C_INCLUDE_PATH and MPI_C_LIBRARIES to
> point to//
> //  your MPI.//
> //Call Stack (most recent call first)://
> //  CMakeLists.txt:118 (include)//
> //
> //
> //-- Configuring incomplete, errors occurred!/
>
> If I point to mpic location (via cmake...txt file in the same folder)
> which is the default one I have this massage:
>
> /--
> **************************************************************************//
> //-- Starting configuration of Amber version 20.0.0...//
> //-- CMake Version: 3.17.2//
> //-- For how to use this build system, please read this wiki://
> //--     http://ambermd.org/pmwiki/pmwiki.php/Main/CMake//
> //-- For a list of important CMake variables, check here://
> //-- http://ambermd.org/pmwiki/pmwiki.php/Main/CMake-Common-Options//
> //--
> **************************************************************************//
> //-- Amber source found, building AmberTools and Amber//
> //WARNING: Target "cmTC_0b1ae" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_0b1ae" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //-- Could NOT find MPI_C (missing: MPI_C_HEADER_DIR MPI_C_WORKS) //
> //WARNING: Target "cmTC_0ee75" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_0ee75" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_0ee75" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_0ee75" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //-- Could NOT find MPI_CXX (missing: MPI_CXX_HEADER_DIR MPI_CXX_WORKS) //
> //WARNING: Target "cmTC_10aad" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_10aad" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_10aad" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_10aad" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_36c24" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_36c24" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_36c24" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_36c24" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_7baee" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_7baee" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_7baee" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_7baee" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_9b8cd" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_9b8cd" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_9b8cd" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/bin".  Targets may link only to libraries.
> CMake is dropping the item.//
> //WARNING: Target "cmTC_9b8cd" requests linking to directory
> "/usr/lib64/mpi/gcc/mpich/lib64".  Targets may link only to libraries.
> CMake is dropping the item.//
> //-- Could NOT find MPI_Fortran (missing: MPI_Fortran_F77_HEADER_DIR
> MPI_Fortran_MODULE_DIR MPI_Fortran_WORKS) //
> //-- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND
> MPI_Fortran_FOUND) //
> //CMake Error at cmake/MPIConfig.cmake:12 (message)://
> //  You requested MPI, but the MPI C library was not found. Please
> install one//
> //  and try again, or set MPI_C_INCLUDE_PATH and MPI_C_LIBRARIES to
> point to//
> //  your MPI.//
> //Call Stack (most recent call first)://
> //  CMakeLists.txt:118 (include)/
>
>
> Indeed, I also have a problem with cuda (10.2 in my case).
>
> Can you help me please?
>
>
> Regards,
>
> Filip
>
>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sat May 16 2020 - 03:00:02 PDT
Custom Search