[AMBER] CPPTRAJ: distance between atoms

From: emanuele falbo <falbo.emanuele.gmail.com>
Date: Mon, 4 May 2020 11:55:27 +0100

Dear all,

I want to compute the distance between two type of atoms from a MD
I am using cpptraj which returns the distance between the center of mass:

distance dist .%Type1 .%Type2 out file.dat

However, the file.dat contains different distances from those that
I can check in molecular editor (like VMD).

Do you have any idea about how to get just the distances between each
individual atom types?
Thanks in advance for the help.


*Emanuele Falbo*
PhD student
Penfold group
School of Natural and Environmental Sciences
Bedson Building, Newcastle University
Newcastle upon Tyne, NE1 7RU
w: http://tompenfoldresearch.weebly.com/
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Received on Mon May 04 2020 - 05:00:02 PDT
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