Re: [AMBER] kindly guide me

From: David A Case <>
Date: Wed, 19 Feb 2020 08:56:47 -0500

On Wed, Feb 19, 2020, ALAMGIR KHAN wrote:

>in xleap I run a bond command " bond 4HCU.442.SG 4HCU.619.C25", it ran
>okay, and save the pdb, while i checked in chimera, i observe that there
>is no bond between residue 442 and ligand C25 Atom.

To add to what Pietro already suggested, you can also use the parmed
"printBonds" command to find out what bonds are actually in your prmtop


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Received on Wed Feb 19 2020 - 06:00:04 PST
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