Dear Amber Users,
* When I read my MDCRD file in CPPTRAJ, it shows that it's reading 18 of
1750 frames.
INPUT TRAJECTORIES:
0: 'prod_noW.mdcrd' is an AMBER trajectory, Parm native_nowat.top (reading
18 of 1750)
Coordinate processing will occur on 18 frames.
My mdcrd file actually contains 245,755 frames as per the following email:
http://archive.ambermd.org/201107/0414.html
* When I TRAJIN my mdcrd file, I got the following warning:
Warning: Trajectory only contains box lengths and topology has no box info.
Warning: To set box angles for topology use the 'parmbox' command.
So, apparently my topology file doesn't have box information but my
trajectory file has box coordinates. Should I skip reading the box values
from trajectory file? If so, Can can I do it. And, I would like to know if
there is a way to understand why it reads less number of frames. Can
someone help me with this?
Thanks,
Catherine
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Received on Mon Feb 03 2020 - 10:30:03 PST
