Dear Tim,
If you have a pair distance file, then you can do a clustering analysis with whatever statistical package you like...
e.g. R: http://girke.bioinformatics.ucr.edu/GEN242/pages/mydoc/Rclustering.html
Best,
Matias
------------------------------------
PhD.
Researcher at Biomolecular Simulations Lab.
Institut Pasteur de Montevideo | Uruguay
[
http://pasteur.uy/en/labs/biomolecular-simulations-laboratory]
[
http://www.sirahff.com]
----- Mensaje original -----
De: "Tim Davis" <tdavis.2019a.gmail.com>
Para: amber.ambermd.org
Enviados: Sábado, 19 de Octubre 2019 19:26:51
Asunto: [AMBER] clustering using distance matrix file only
Hi,
Is it possible to perform clustering using only the pairdist file?
Everything I've tried requires the trajectory file or a coord file to be
present. Why are these two files necessary if I only want the information
in the summary and info file. I don't want any PDB written. Thanks.
td
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Received on Mon Oct 21 2019 - 20:30:02 PDT
