Re: [AMBER] clustering using distance matrix file only

From: Matias Machado <>
Date: Tue, 22 Oct 2019 00:12:09 -0300 (UYT)

Dear Tim,

If you have a pair distance file, then you can do a clustering analysis with whatever statistical package you like...

e.g. R:



Researcher at Biomolecular Simulations Lab.
Institut Pasteur de Montevideo | Uruguay

----- Mensaje original -----
De: "Tim Davis" <>
Enviados: Sábado, 19 de Octubre 2019 19:26:51
Asunto: [AMBER] clustering using distance matrix file only

Is it possible to perform clustering using only the pairdist file?
Everything I've tried requires the trajectory file or a coord file to be
present. Why are these two files necessary if I only want the information
in the summary and info file. I don't want any PDB written. Thanks.
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Received on Mon Oct 21 2019 - 20:30:02 PDT
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