Hello,
I'm trying to install AMBER10 for some reasons.
For now, I cannot use recent version of AMBER.
By the way, installation of AmberTools10 is completed.
However, I cannot compile the AMBER10 from the sequence of 'make serial'
with the error message below.
cd lib && make install
make[1]: Entering directory '/home/j1300704/amber10/src/lib'
gfortran -static -o new2oldparm new2oldparm.o nxtsec.o
mv new2oldparm ../../exe
/bin/rm _*.f
/bin/rm: cannot remove '_*.f': No such file or directory
Makefile:39: recipe for target 'install' failed
make[1]: [install] Error 1 (ignored)
make[1]: Leaving directory '/home/j1300704/amber10/src/lib'
cd addles && make install
make[1]: Entering directory '/home/j1300704/amber10/src/addles'
cd ../lib; ./Makelist ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o
make[2]: Entering directory '/home/j1300704/amber10/src/lib'
make[2]: 'random.o' is up to date.
make[2]: Leaving directory '/home/j1300704/amber10/src/lib'
make[2]: Entering directory '/home/j1300704/amber10/src/lib'
make[2]: 'mexit.o' is up to date.
make[2]: Leaving directory '/home/j1300704/amber10/src/lib'
make[2]: Entering directory '/home/j1300704/amber10/src/lib'
make[2]: 'nxtsec.o' is up to date.
make[2]: Leaving directory '/home/j1300704/amber10/src/lib'
gfortran -static -o addles lesmain.o addspace.o readprm.o writprm.o
readcrd.o writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o geti.o
unit.o getc.o alert.o echo.o get4c.o getd.o wlesprm.o
lesprm.o les2prm.o checksz.o addspace_atm1st.o ../lib/random.o
../lib/mexit.o ../lib/nxtsec.o
mv addles ../../exe
make[1]: Leaving directory '/home/j1300704/amber10/src/addles'
cd sander && make serial
make[1]: Entering directory '/home/j1300704/amber10/src/sander'
./checkserconf
cpp -traditional -P -xassembler-with-cpp -Dsecond=ambsecond -DBINTRAJ
ncsu-umbrella.f > _ncsu-umbrella.f
gfortran -c -O3 -fno-range-check -fno-second-underscore -ffree-form -o
ncsu-umbrella.o _ncsu-umbrella.f
f951: Fatal Error: Reading module ‘netcdf’ at line 1 column 2: Unexpected
EOF
compilation terminated.
depend:2082: recipe for target 'ncsu-umbrella.o' failed
make[1]: *** [ncsu-umbrella.o] Error 1
make[1]: Leaving directory '/home/j1300704/amber10/src/sander'
Makefile:12: recipe for target 'serial' failed
make: *** [serial] Error 2
Any help would be grateful. :)
--
*Junbeom Cho*
Integrated Ph. D. Student
Theoretical and Computational Soft Matters Laboratory
School of Chemical and Biological Engineering
Seoul National University
1, Gwanak-ro, Gwanak-gu, Seoul, 08826, Korea
Tel: +82-2-880-1529
E-mail: cjb0704.snu.ac.kr
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Received on Mon Oct 21 2019 - 03:00:02 PDT
