The message is informational only. Older versions of cpptraj did not
preserve time in netcdf files - that behavior has since been fixed. You can
add time information back if desired with the ‘time’ action (recent
versions of cpptraj only).
-Dan
On Tue, Oct 1, 2019 at 9:26 AM Sarath Dantu (Staff) <
Sarath.Dantu.brunel.ac.uk> wrote:
> Our local cluster has amber12 (2012) installed and I ran some simulations
> with it. The generated trajectory files in netcdf format when processed
> with cpptraj (v) has no issues but the same prmtop and netcdf files when
> processed with cpptraj (V15.0) and cpptraj [V4.14.0 (AmberTools V19.07)]
> throws the following warning:
>
> "Warning: NetCDF file time variable defined but empty. Disabling."
>
> Please suggest how this issue can be resolved.
>
> Best regards,
>
> Sarath
>
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Received on Tue Oct 01 2019 - 10:30:02 PDT
