On 2019-09-24 07:13, ilhan.yavuz wrote:
> use netcdf
> 1
> Fatal Error: Cannot read module file ‘netcdf.mod’ opened at (1),
> because
> it was created by a different version of GNU Fortran
> compilation terminated.
Well, I just installed amber yesterday on a CentOS 7 system and it
accepted the netcdf yum
installed for that operating system. Build was:
#as root
yum install netcdf-devel netcdf-cxx-devel netcdf-fortran-devel
netcdf-openmpi-devel
ln -s /usr/lib64/gfortran/modules/netcdf.mod /usr/include/netcdf.mod
#previous because otherwise amber build cannot find the file
#as account building amber
export PATH=/opt/ompi401/bin:$PATH #or it cannot figure out which
mpi, fails in fftw
./configure --python-install local -mpi \
--with-python /usr/bin/python \
--with-netcdf /usr gnu
make 2>&1 | tee build_2019_09_23C.log
export AMBERHOME=$PWD
export DO_PARALLEL='/opt/ompi401/bin/mpirun -n 4'
. amber.sh
make test 2>&1 | tee tests_2019_09_23C.log
# 1016 file comparisons passed
# 0 file comparisons failed (0 ignored)
# 1 tests experienced errors
# Test log file saved as
/usr/common/src/amber18/logs/test_at_parallel/2019-09-23_15-50-07.log
Regards,
David Mathog
mathog.caltech.edu
Manager, Sequence Analysis Facility, Biology Division, Caltech
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Received on Tue Sep 24 2019 - 10:00:02 PDT
