Re: [AMBER] AMBER18 installation error

From: David A Case <>
Date: Tue, 3 Sep 2019 09:29:50 -0400

On Tue, Sep 03, 2019, wrote:
>I try to install AMBER18 using gnu and intel compiler, but both
>encountered errors.

What do you mean by "using gnu and intel compilers"? You have to choose
one or the other. What were the arguments you gave to the
configure script?

My best guess is that your attempt to use the gnu compilers is actually
seeing something left over from an earlier attempt to use Intel

>The installation failed, the information:
>/public/home/test/amber18/lib/libfftw3.a(vrank3-transpose.o): In function `apply_cut':
>vrank3-transpose.c:(.text+0x5f7): undefined reference to `_intel_fast_memmove'
>vrank3-transpose.c:(.text+0x661): undefined reference to `_intel_fast_memcpy'

Is that possible? I'd suggest trying with a clean installation, and
choosing just the gnu compilers.

> ...I installed the openmpi based on gnu and intel compiler.

Again, it looks like problems are arising from trying to use both gnu
and intel compilers.


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Received on Tue Sep 03 2019 - 07:00:02 PDT
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