Hi David
thank you for your answer.
How can I redefine residues? Could you please suggest me?
yes I used crystal structure of ligand and then added hydrogens.
thank you
Sadaf
On Tue, Jul 16, 2019 at 12:34 PM David A Case <david.case.rutgers.edu>
wrote:
> On Mon, Jul 15, 2019, Sadaf Rani wrote:
>
> >(Residue 1: GLN, Nonterminal, was not found in name map.)
>
> This just means that you did not redefine what "GLN" means.
>
> >Warning: Close contact of 1.285552 angstroms between .R<NVAL 27>.A<H1 2>
> >and .R<GLN 28>.A<H 2>
>
> It is not uncommon to get close contacts when you build hydrogens onto
> crystal structures -- (not sure if that is what was done here are not.)
> Since all these contacts are greater than 1 Å, they will probably go
> away upon an initial minimization.
>
>
> Basically, it looks like you should just proceed.
>
> ...dac
>
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Received on Tue Jul 16 2019 - 12:00:03 PDT
