[AMBER] install Amber16

From: Bacaita Simona <bsimona77.yahoo.com>
Date: Wed, 3 Jul 2019 11:47:53 +0000 (UTC)

I am trying to install Amber16 on a Ubuntu 18.
During configure, with -noX11 option, I had the message " You currently have a PYTHONPATH environment variable set. This may cause    unexpected behavior when running the Python interpreter in Miniconda2.    For best results, please verify that your PYTHONPATH only points to    directories of packages that are compatible with the Python interpreter    in Miniconda2: /home/simona/amber16/miniconda"
and when finishing configure the error message "AttributeError("'module' object has no attribute 'BadZipFile'",)
Error occurred during Python install:
Installing packagesProblem installing Miniconda... see error above.Configure failed due to the errors above!"
I checked the PYTHONPATH and it was /home/simona/amber16/lib/python2.7/site-packages:/home/simona/amber16/lib/python2.7/site-packages
I changed PYTHONPAH to export PYTHONPATH=/home/simona/amber16/miniconda
Re-run configure and it was successfully.
Changed the bashrc file by adding the suggested line test -f ...... && source /home/simona/amber16/amber.sh
Source bashrc file
Checking PYTHONPATH and it was /home/simona/amber16/lib/python2.7/site-packages:/home/simona/amber16/miniconda
Error: Could not import Amber Python modules!    Probably your Amber Python environment was not set up correctly.
We recommend adding the line:
   test -f /home/simona/amber16/amber.sh  && source /home/simona/amber16/amber.sh (sh/bash/zsh)or   test -f /home/simona/amber16/amber.csh && source /home/simona/amber16/amber.csh (csh/tcsh)
to your login shell resource file (e.g., ~/.bashrc or ~/.cshrc).
Checked the bashrc file and the line is saved.

What should I do now ?

Simona Bacaita

AMBER mailing list
Received on Wed Jul 03 2019 - 05:00:02 PDT
Custom Search