Re: [AMBER] Adding disulphide bonds.

From: David Case <david.case.rutgers.edu>
Date: Wed, 19 Jun 2019 16:10:43 +0000

On Tue, Jun 18, 2019, Rui Chen wrote:
>
>I am using tleap to add disulphide bonds, using the following command:
>
>*bond fasciculin.3.SG fasciculin.22.SG

First, make sure the this command is all plain text (your email had some
very odd URL links that I have removed here.

Second, use the "desc" command to make sure that what leap has is what
you think: e.g.

desc. fasciculin.3
or
desc fasciculin.22

Does that show that these residues are indeed CYX residues with an SG
atom? Based on your pdb file, it should, but it's good to double-check.

...good luck...dac



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Received on Wed Jun 19 2019 - 09:30:02 PDT
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