Re: [AMBER] temperature not reaching target value in heating simulation

From: Vaibhav Dixit <vaibhavadixit.gmail.com>
Date: Mon, 3 Jun 2019 19:27:12 +0100

I tried running the serial mode, but it also failed very quickly within 2-3
mins.
Error files are attached for your reference.
The first line says end of file error, but there are other messages in the
file which I don't understand.
forrtl: severe (24): end-of-file during read, unit 5, file
/mnt/iusers01/ceas01/r11831vd/P450-md/3A4/3A4-implicit-sol/heat3.in
Please suggest me what's wrong here.

On Mon, Jun 3, 2019 at 5:00 PM David A Case <david.case.rutgers.edu> wrote:

> On Mon, Jun 03, 2019, Vaibhav Dixit wrote:
> >The job didn't even start properly, mdout file is very small (pasted
> below,
> >only 7 KB).
>
> OK...so it seems that the grep output you put in the last email was
> unrelated to this problem (since it had NSTEP going to 1500000 or so.)
>
> I don't see any problem offhand in your output, but I never run constant
> pH simulations, so others may wish to chime in here. Run a short
> simulation in serial mode -- sometimes a serial calculation gives better
> error messages.
>
> ....dac
>
>
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-- 
Regards,
Dr. Vaibhav A. Dixit,
Visiting Scientist at the Manchester Institute of Biotechnology (MIB), The
University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
AND
Assistant Professor,
Department of Pharmacy,
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Received on Mon Jun 03 2019 - 12:00:03 PDT
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