Dear Amberites,
We are pleased to announce the release of SIRAH Lipids, a complete set of phospholipid parameters and libraries to run coarse-grained simulations of protein-membrane systems with AMBER and GROMACS.
You can access the preprint version of the manuscript at BioRxiv [
https://doi.org/10.1101/627570]
The just released SIRAH package contains residue-based topologies for DMPC, DPPC, POPC, POPE, POPS and fragment-based topologies (Lipid11-17 style) for PC, PE, PS, MY, PL, OL.
Comprehensive mapping files were developed to easily convert most of the available all-atoms models to SIRAH.
SIRAH is an open source initiative for biomolecular simulations, you can download it and access tutorials for free at [
http://www.sirahff.com]
Enjoy!
MatÃas Machado
------------------------------------
PhD.
Researcher at Biomolecular Simulations Lab.
Institut Pasteur de Montevideo | Uruguay
[pasteur.uy/en/labs/biomolecular-simulations-laboratory/]
[
http://www.sirahff.com]
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Received on Wed May 15 2019 - 12:00:02 PDT
