Re: [AMBER] Problem with preparing parameters with antechamber for modified amino acid

From: Bill Ross <>
Date: Sun, 12 May 2019 01:52:59 -0700

On 5/11/19 11:40 PM, Saikat Dutta chowdhury wrote:
> 1. When I am opening the pdb files for the system I found out that the
> phosphate moieties are no longer attached to the amino acids.

What viewer? Likely it's seeing a residue it doesn't know the bonding
of, since it's an unknown res name.


AMBER mailing list
Received on Sun May 12 2019 - 02:00:02 PDT
Custom Search