[AMBER] Force field for nucleobases, nucleosides and nucleotides

From: Elisa Pieri <elipieri.stanford.edu>
Date: Thu, 2 May 2019 14:10:06 -0700


I want to run MM simulations on solvated nucleobases, nucleosides and
nucleotides. I see that Amber only have parameters for nucleotides (and
with an "incomplete" phosphate group); is this correct?
Do parameters for complete nucleobases, nucleosides and nucleotides exist?
If yes, how can I access them?
I couldn't find information about this online.

Thank you!
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Received on Thu May 02 2019 - 14:30:02 PDT
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