[AMBER] puckering coordinates

From: MYRIAN TORRES RICO <myriam.torres.iiq.csic.es>
Date: Wed, 20 Feb 2019 12:17:48 +0100

Hi,

thanks for the answers. I have change the ":" to "." and now it's ok,
appearing 1 atom instead of 3:

  0: [pucker p1 .2175 .2191 .2187 .2185 .2178 .2177 out pucker1.dat
cremer range360]
         .2175 (1 atoms)
         .2191 (1 atoms)
         .2187 (1 atoms)
         .2185 (1 atoms)
         .2178 (1 atoms)


But I haven't got the theta and amplitude angles yet...
I don't know what to put inside the script...This is my script:


pucker p1 .2175 .2191 .2187 .2185 .2178 .2177 out pucker.dat cremer
amplitude theta range360


and results:

#Frame p1
        1 97.8335
        2 103.7672
        3 107.0839
        4 90.2098
                    .
                    .
                    .


Could it be failure of my topology file?...


thanx in advance


Myriam


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Received on Wed Feb 20 2019 - 03:30:03 PST
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