[AMBER] does surf command use for stripped trajectory?

From: <g.bakrani.sci.ui.ac.ir>
Date: Wed, 17 Oct 2018 15:00:56 +0330

Hello all,
I have trying to analyze the results of an association simulation
trajectory, so i stripped water and ions first, and then stripped
molecules in the box and have kept just one molecule. Then i ran surf
command to survey accessible surface of interaction involved residues.
May i know wheter the surf command consider the association and
perform the analysis or just consider the molecule alone and calculate
the surface of residues independent of association?
Thanks for your kind help,
Best regards. 
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Received on Wed Oct 17 2018 - 04:30:02 PDT
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